STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0641Hypothetical protein; Identified by similarity to GB:AAP57703.1. (216 aa)    
Predicted Functional Partners:
SPO0642
Oxidoreductase, FAD-binding protein.
       0.791
SPO0643
Oxidoreductase, aldo/keto reductase family.
       0.773
SPO3258
Glycosyl hydrolase, family 25; Identified by match to protein family HMM PF01183.
      0.653
SPO0640
4-carboxymuconolactone decarboxylase domain/ alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.594
SPO0644
Hypothetical protein; Identified by similarity to GB:BAC48747.1.
       0.534
SPO0645
Multidrug resistance efflux pump, putative; Identified by similarity to GB:BAC48748.1.
       0.534
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
  
 0.516
SPO3732
Hypothetical protein; Identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339.
 
     0.421
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.