Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0645Multidrug resistance efflux pump, putative; Identified by similarity to GB:BAC48748.1. (412 aa)    
Predicted Functional Partners:
SPO0644
Hypothetical protein; Identified by similarity to GB:BAC48747.1.
       0.815
SPO2951
Hypothetical protein; Identified by similarity to PIR:G97655; match to protein family HMM PF03724.
 
   
 0.641
SPO1240
Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 
 0.638
gltS
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
 
    0.627
SPO1496
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
  
 0.610
SPO1398
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.601
SPO0643
Oxidoreductase, aldo/keto reductase family.
  
    0.537
SPO0641
Hypothetical protein; Identified by similarity to GB:AAP57703.1.
       0.534
SPO0642
Oxidoreductase, FAD-binding protein.
       0.534
SPO1871
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
 
     0.489
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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