STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0650Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family. (360 aa)    
Predicted Functional Partners:
SPO0649
Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
SPO0651
Sugar ABC transporter, ATP-binding protein.
 
 0.991
SPO0648
Bmp family protein.
 
 
 0.986
SPO0376
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.984
SPO2805
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.983
SPO0378
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.978
SPO2803
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.978
SPO0379
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by match to protein family HMM PF02608.
 
 
 0.959
SPO2802
Bmp family protein; Identified by match to protein family HMM PF02608.
 
 
 0.946
SPO0377
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.926
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.