STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xdhCXanthine dehydrogenase accessory factor; Identified by similarity to GB:CAB41849.1. (322 aa)    
Predicted Functional Partners:
xdhB
Xanthine dehydrogenase, B subunit; Identified by similarity to GB:CAA04470.2.
 
 0.996
xdhA
Xanthine dehydrogenase, A subunit; Identified by similarity to GB:CAA04469.1.
 
 
 0.989
SPO0831
Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.
 
 
 0.876
SPO2956
Guanine deaminase, putative; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
 
  0.858
SPO0651
Sugar ABC transporter, ATP-binding protein.
       0.807
SPO0871
Identified by match to protein family HMM PF00576; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.736
SPO0830
Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.
  
 0.689
SPO0650
Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family.
       0.674
SPO0869
Membrane protein, putative; Identified by match to protein family HMM PF00034; match to protein family HMM PF06181.
 
     0.670
SPO0649
Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family.
       0.667
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.