STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0665SlyX protein, putative; Identified by similarity to SP:Q89SJ8. (64 aa)    
Predicted Functional Partners:
SPO0668
histidyl-tRNA synthetase-like protein; Identified by similarity to SP:P56194.
 
     0.740
SPO3318
Hypothetical protein; Identified by similarity to GB:AAH10441.1.
  
     0.709
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.701
SPO0393
Identified by match to protein family HMM PF01694.
  
     0.680
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.669
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.649
hisS
histidyl-tRNA synthetase.
       0.642
SPO0669
ATP phosphoribosyltransferase, putative; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
       0.642
SPO3221
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.626
SPO3715
Carbonic anhydrase, putative; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
     0.612
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.