STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0672Hypothetical protein; Identified by similarity to PIR:AH2953. (191 aa)    
Predicted Functional Partners:
SPO0671
Hypothetical protein; Identified by similarity to GB:BAB51085.1.
 
  
 0.994
dnaE2
DNA polymerase III, alpha subunit, putative; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
 
  
 0.961
dinB
DNA polymerase IV, putative; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
  
 0.890
dnaE
DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443.
  
  
 0.489
tpa
Taurine--pyruvate aminotransferase; Identified by similarity to SP:Q9APM5; PMID: 16541231; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.480
SPO0462
Antibiotic biosynthesis monooxygenase domain protein.
  
     0.465
SPO2754
Hypothetical protein; Identified by similarity to GB:AAK24713.1.
  
     0.463
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.425
SPO3375
Hypothetical protein; Identified by similarity to GB:BAB50839.1.
  
     0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.