Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0682Monooxygenase family protein. (537 aa)    
Predicted Functional Partners:
SPO0683
Metallo-beta-lactamase family protein.
    0.966
SPO0681
Hypothetical protein; Identified by similarity to GB:CAE31393.1.
 
    0.963
SPO0680
Glyoxalase family protein.
 
   
 0.845
hmgA
Homogentisate 1,2-dioxygenase; Identified by similarity to SP:Q9X4F5.
 
  
 0.825
hmgC
Maleylacetoacetate isomerase; Identified by similarity to SP:O43708.
 
   
 0.765
SPO0687
Transcriptional regulator, MarR family.
 
  
 0.705
hmgB
Fumarylacetoacetase.
 
  
 0.697
SPO0684
Glyoxalase family protein.
       0.435
SPO0230
Hypothetical protein; Identified by similarity to GB:AAK25258.1.
   
 0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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