STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmgAHomogentisate 1,2-dioxygenase; Identified by similarity to SP:Q9X4F5. (451 aa)    
Predicted Functional Partners:
hppD
4-hydroxyphenylpyruvate dioxygenase; Identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263.
 
 0.996
hmgC
Maleylacetoacetate isomerase; Identified by similarity to SP:O43708.
 
 
 0.993
hmgB
Fumarylacetoacetase.
  
 0.990
SPO0682
Monooxygenase family protein.
 
  
 0.854
SPO0687
Transcriptional regulator, MarR family.
 
   
 0.853
SPO0683
Metallo-beta-lactamase family protein.
 
  
 0.852
SPO0577
Hypothetical protein; Identified by similarity to PIR:D83286.
 
 
 0.824
SPO0932
methylmalonyl-CoA epimerase; Identified by similarity to GB:AAK52053.1; match to protein family HMM PF00903.
  
 
 0.816
SPO0681
Hypothetical protein; Identified by similarity to GB:CAE31393.1.
 
     0.815
phhB
4a-hydroxytetrahydrobiopterin dehydratase; Identified by similarity to SP:P80095; match to protein family HMM PF01329.
 
  
 0.706
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.