STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0707Transcriptional regulator, DeoR family. (291 aa)    
Predicted Functional Partners:
SPO0706
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Assignment partly based on location in oligopeptide ABC transporter gene cluster; identified by similarity to SP:Q9X4Y1.
       0.773
glpD
Aerobic glycerol-3-phosphate dehydrogenase; Identified by similarity to SP:P13035; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.688
SPO0704
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063.
  
    0.597
SPO0702
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.594
SPO0703
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.594
SPO0705
Oligopeptide ABC transporter, permease protein; Assignment partly based on location in oligopeptide ABC transport gene cluster.
       0.594
hpsR
Transcriptional regulator, LacI family; PMID: 20150239.
  
  
 0.510
ptsN
PTS IIA-like nitrogen-regulatory protein PtsN; Identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419.
 
  
 0.505
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221.
 
  
 0.502
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.499
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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