Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
chvGSensor histidine kinase ChvG. (569 aa)    
Predicted Functional Partners:
chvI
DNA-binding response regulator ChvI; Identified by similarity to SP:P50350.
 
 0.994
SPO0712
Hpr serine kinase/phosphatase domain protein; Identified by similarity to SP:O34483.
       0.836
SPO1023
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.829
SPO0132
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
0.809
phoB
Phosphate regulon transcriptional regulatory protein PhoB; Identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.780
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
0.771
SPO0715
Phosphocarrier protein HPr.
     
 0.769
SPO0713
ATPase, putative; Displays ATPase and GTPase activities.
       0.767
SPO0714
PTS system IIA component, Man family.
       0.767
petR
DNA-binding response regulator PetR; Identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.739
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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