STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0716Hypothetical protein; Identified by similarity to PIR:D82434. (295 aa)    
Predicted Functional Partners:
SPO2471
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
  
 0.724
chvG
Sensor histidine kinase ChvG.
 
     0.712
SPO0715
Phosphocarrier protein HPr.
       0.705
SPO0713
ATPase, putative; Displays ATPase and GTPase activities.
       0.674
SPO0714
PTS system IIA component, Man family.
       0.674
SPO1295
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.628
SPO0712
Hpr serine kinase/phosphatase domain protein; Identified by similarity to SP:O34483.
       0.608
SPO2795
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.572
SPO1979
Acyltransferase, putative; Identified by match to protein family HMM PF01553.
  
  
 0.536
SPO0718
Hypothetical protein; Identified by similarity to GB:AAK08138.1.
 
     0.506
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.