STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0718Hypothetical protein; Identified by similarity to GB:AAK08138.1. (280 aa)    
Predicted Functional Partners:
bhbD
3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P52041.
  
  
 0.728
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.707
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.696
SPO3089
ATPase, putative.
  
    0.672
tkt
Transketolase; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; Belongs to the transketolase family.
  
  
 0.657
chvG
Sensor histidine kinase ChvG.
  
  
 0.644
SPO1741
Hypothetical protein; Identified by similarity to GB:CAE29115.1.
  
    0.639
SPO1109
Identified by match to protein family HMM PF03372.
  
     0.636
SPO1740
Hypothetical protein; Identified by similarity to PIR:F97376.
  
    0.634
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
    0.632
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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