Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
etfAElectron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974. (309 aa)    
Predicted Functional Partners:
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975.
 0.999
SPO0316
Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
 
 0.997
ivD
isovaleryl-CoA dehydrogenase; Identified by similarity to SP:P26440; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
 
 0.971
SPO2698
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.962
SPO2211
acyl-CoA dehydrogenase; Identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
 
 0.958
SPO2380
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
 
 0.957
acdA-2
acyl-CoA dehydrogenase.
 
 0.956
acdA-1
acyl-CoA dehydrogenase.
 
 0.932
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
 
 
    0.909
gcdH
glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
 
 0.898
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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