STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0723Hypothetical protein; Identified by similarity to PIR:C98285. (66 aa)    
Predicted Functional Partners:
SPO0722
ATP:cob(I)alamin adenosyltransferase, putative; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.842
SPO0724
Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.695
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
  
     0.586
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.584
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.501
SPO0727
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.491
SPO1381
Hypothetical protein; Identified by similarity to PIR:E98182.
  
     0.485
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
     0.466
SPO0725
Bacterial SH3 domain family protein.
       0.460
SPO2503
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.460
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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