STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SPO0737TRAP dicarboxylate transporter family protein, DctQ subunit. (168 aa)    
Predicted Functional Partners:
SPO0736
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
 
 0.941
SPO0738
TRAP dicarboxylate transporter, DctP subunit; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
  
 0.926
SPO1454
TRAP dicarboxylate transporter, DctP subunit; Identified by match to protein family HMM PF03480.
 
  
 0.823
SPO1456
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
 
 0.661
SPO0734
PaaX domain protein; Identified by similarity to SP:P76086.
 
     0.570
SPO1852
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
  
     0.508
paaZ
Phenylacetic acid degradation protein PaaZ; Identified by similarity to SP:P77455; match to protein family HMM PF00171; match to protein family HMM PF01575.
  
    0.497
SPO0743
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
    0.494
SPO0739
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
       0.456
paaD
Phenylacetic acid degradation protein PaaD; Identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
     0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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