STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0738TRAP dicarboxylate transporter, DctP subunit; Identified by similarity to SP:P37735; match to protein family HMM PF03480. (339 aa)    
Predicted Functional Partners:
SPO0737
TRAP dicarboxylate transporter family protein, DctQ subunit.
 
  
 0.926
SPO0736
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.912
SPO1455
TRAP dicarboxylate transporter, DctQ subunit, putative.
 
  
 0.822
SPO1456
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.767
SPO2606
Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409.
   
  
 0.668
SPO1465
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
      
 0.650
dctP
TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.
      
 0.600
SPO0739
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
       0.572
SPO0734
PaaX domain protein; Identified by similarity to SP:P76086.
 
     0.541
SPO0743
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.522
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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