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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaFphenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (436 aa)    
Predicted Functional Partners:
paaD
Phenylacetic acid degradation protein PaaD; Identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
 
 0.995
paaG
Phenylacetic acid degradation protein PaaG; Identified by similarity to GB:AAC24334.1; match to protein family HMM PF05138; match to protein family HMM TIGR02156.
 
 
 0.961
paaJ
Phenylacetic acid degradation protein PaaJ; Identified by similarity to SP:P76080; match to protein family HMM PF01883; match to protein family HMM TIGR02159.
 
  
 0.958
paaH
Phenylacetic acid degradation protein PaaH; Identified by similarity to SP:P76078; match to protein family HMM PF06243; match to protein family HMM TIGR02157.
 
 
 0.954
paaI
Phenylacetic acid degradation protein PaaI; Identified by similarity to SP:P76079; match to protein family HMM PF05138; match to protein family HMM TIGR02158.
 
 
 0.952
paaK
Phenylacetic acid degradation oxidoreductase PaaK; Identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160.
 
 
 0.938
SPO3289
phenylacetate-CoA ligase, putative; Identified by similarity to GB:AAF26285.1.
  
  
 
0.926
SPO0752
Phenylacetic acid degradation protein, putative.
  
 
 0.912
SPO2583
Identified by match to protein family HMM PF01425.
    
  0.902
SPO2938
Identified by match to protein family HMM PF01425.
    
  0.902
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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