STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0743Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (198 aa)    
Predicted Functional Partners:
paaD
Phenylacetic acid degradation protein PaaD; Identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
     0.822
paaB
enoyl-CoA hydratase/isomerase PaaB; Identified by similarity to SP:P77467; match to protein family HMM PF00378.
 
    0.795
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.779
SPO0739
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
 
  
 0.621
SPO0752
Phenylacetic acid degradation protein, putative.
  
     0.614
SPO0738
TRAP dicarboxylate transporter, DctP subunit; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
     0.522
SPO0737
TRAP dicarboxylate transporter family protein, DctQ subunit.
 
    0.496
SPO0734
PaaX domain protein; Identified by similarity to SP:P76086.
 
    0.490
paaZ
Phenylacetic acid degradation protein PaaZ; Identified by similarity to SP:P77455; match to protein family HMM PF00171; match to protein family HMM PF01575.
 
   
 0.474
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.