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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0758Beta-ketoadipyl CoA thiolase; Identified by similarity to SP:Q51956; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)    
Predicted Functional Partners:
SPO0772
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.987
SPO0739
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
 0.972
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
 
 0.967
SPO1447
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01796.
  
 
 0.849
paaG
Phenylacetic acid degradation protein PaaG; Identified by similarity to GB:AAC24334.1; match to protein family HMM PF05138; match to protein family HMM TIGR02156.
 
  
 0.822
SPO0777
Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.772
SPO0147
enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.769
SPO1687
Identified by similarity to SP:P52046; match to protein family HMM PF00378.
  
 0.769
paaZ
Phenylacetic acid degradation protein PaaZ; Identified by similarity to SP:P77455; match to protein family HMM PF00171; match to protein family HMM PF01575.
 
 0.762
bhbD
3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P52041.
 
 0.704
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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