STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0762Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (216 aa)    
Predicted Functional Partners:
SPO3340
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
     0.768
SPO3621
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
     0.728
SPO0768
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
  
  
 0.624
SPO0760
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
    0.523
SPO0761
Identified by match to protein family HMM PF04199; match to protein family HMM TIGR01409.
       0.509
SPO0764
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
     0.449
SPO0770
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.435
SPO0759
Hypothetical protein; Identified by Glimmer2; putative.
       0.430
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.