STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0767Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444. (230 aa)    
Predicted Functional Partners:
SPO3864
Hypothetical protein; Identified by similarity to PIR:H84070.
     0.971
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
     0.777
SPO2648
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.724
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
     0.700
SPO1016
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.637
SPO2651
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
     0.600
SPO3511
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.558
SPO2341
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
 
     0.506
SPO0764
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
     0.475
SPO1636
SREBP protease/CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02163.
 
     0.474
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.