Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0768Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614. (257 aa)    
Predicted Functional Partners:
SPO0769
Identified by match to protein family HMM PF03401.
 
  
 0.886
SPO0770
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.865
SPO0771
Identified by match to protein family HMM PF01970.
 
    0.827
SPO3661
Identified by match to protein family HMM PF02682.
  
    0.705
SPO0762
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
  
 0.637
SPO1961
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
  
     0.626
SPO3660
Urea amidolyase-like protein.
  
    0.626
SPO3688
Extradiol ring-cleavage dioxygenase family protein; Identified by match to protein family HMM PF00903.
 
  
 0.593
SPO0764
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
   
 0.499
SPO0773
Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.458
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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