Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0769Identified by match to protein family HMM PF03401. (346 aa)    
Predicted Functional Partners:
SPO0771
Identified by match to protein family HMM PF01970.
 
  
 0.957
SPO0770
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.930
SPO0186
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
  
  
  0.923
SPO0768
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
 
  
 0.886
SPO1075
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
  
 0.775
SPO2384
Identified by match to protein family HMM PF01970.
 
  
 0.772
SPO0184
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
  
 0.673
SPO0185
Membrane protein, putative.
  
  
 0.595
SPO3688
Extradiol ring-cleavage dioxygenase family protein; Identified by match to protein family HMM PF00903.
  
     0.591
SPO0764
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
  
  
 0.584
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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