STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0771Identified by match to protein family HMM PF01970. (539 aa)    
Predicted Functional Partners:
SPO0769
Identified by match to protein family HMM PF03401.
 
  
 0.958
SPO0770
Hypothetical protein; Identified by Glimmer2; putative.
     0.954
SPO2382
Identified by similarity to GB:CAE42344.1; match to protein family HMM PF03401.
 
  
 0.864
SPO1073
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
 
  
 0.862
SPO0186
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
 
  
 0.854
SPO0768
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
 
    0.828
SPO0185
Membrane protein, putative.
  
  
 0.606
SPO0772
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.482
SPO0773
Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
       0.482
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.