Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0784Chloramphenicol acetyltransferase, putative; Identified by similarity to SP:P26838; match to protein family HMM PF00132. (204 aa)    
Predicted Functional Partners:
phnE
Phosphonate ABC transporter, permease protein; Identified by similarity to PIR:H95946; match to protein family HMM PF00528.
 
     0.811
phoE
Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.
 
     0.795
phnD
Phosphonate ABC transporter, periplasmic phosphonate-binding protein; Identified by similarity to SP:P16682.
 
     0.744
phoC
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
   
 0.719
phnK
Alkylphosphonate utilization protein PhnK; Identified by similarity to SP:P16678.
 
     0.583
phnH
Alkylphosphonate utilization protein PhnH; Identified by similarity to SP:P16686.
 
     0.569
SPO0785
2-dehydro-3-deoxygalactonokinase, putative.
       0.558
phnI
Alkylphosphonate utilization protein PhnI; Identified by similarity to SP:P16687.
 
     0.549
phnM
Alkylphosphonate utilization protein PhnM; Identified by similarity to SP:P16689.
 
     0.537
phnJ
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
     0.527
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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