STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0797Bile acid transporter family protein; Identified by match to protein family HMM PF01758. (300 aa)    
Predicted Functional Partners:
SPO0796
Hypothetical protein; Identified by similarity to GB:BAC72444.1.
 
 
   0.954
SPO0798
Monooxygenase domain protein; Identified by similarity to GB:AAS47561.1.
     0.954
SPO0795
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to PIR:E83152; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.947
SPO0799
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.781
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.579
cueR
Cu(I)-responsive transcriptional regulator; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR02044.
  
    0.563
SPO3394
GDSL-like lipase/acylhydrolase, putative; Identified by match to protein family HMM PF00657.
 
     0.421
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.