Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0805Hypothetical protein; Identified by similarity to GB:CAE25511.1. (118 aa)    
Predicted Functional Partners:
trpF
N-(5'phosphoribosyl)anthranilate isomerase; Identified by similarity to SP:Q56320; match to protein family HMM PF00697; Belongs to the TrpF family.
 
     0.851
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.836
SPO0373
Helicase, ATP-dependent, putative.
  
     0.644
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.561
SPO1933
Identified by match to protein family HMM PF06776.
  
     0.556
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.543
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.530
SPO0807
Hypothetical protein; Identified by Glimmer2; putative.
       0.508
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.495
SPO3348
Hypothetical protein; Identified by similarity to GB:CAD85590.1.
  
     0.489
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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