STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0821Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (145 aa)    
Predicted Functional Partners:
SPO0829
Hypothetical protein; Identified by similarity to GB:AAR38366.1.
 
     0.829
SPO0828
Hypothetical protein; Identified by similarity to GB:AAR38365.1.
 
     0.827
SPO0827
Hypothetical protein; Identified by similarity to GB:AAR38364.1; match to protein family HMM PF06684.
 
     0.800
SPO0826
Hypothetical protein; Identified by similarity to GB:AAR38363.1; match to protein family HMM PF06684.
 
     0.770
SPO0830
Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.
 
     0.756
SPO0824
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
     0.707
SPO0831
Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.
 
    0.679
SPO0823
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
     0.676
SPO0825
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.
 
     0.662
SPO0822
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.641
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.