STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0836Hypothetical protein; Identified by similarity to GB:BAB48851.1. (171 aa)    
Predicted Functional Partners:
SPO1435
Identified by match to protein family HMM PF05853.
 
  
 0.765
SPO2703
Hypothetical protein; Identified by similarity to PIR:G82972; match to protein family HMM PF05853.
 
  
 0.755
SPO0835
Cyclase, putative; Identified by similarity to GB:AAC38443.1; match to protein family HMM PF04199.
  
    0.706
SPO2705
Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
 
  
 0.700
lcdH
3-hydroxyacyl-CoA dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.694
SPO0837
Hypothetical protein; Identified by Glimmer2; putative.
       0.515
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
  
 0.493
SPO2004
Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853.
 
  
 0.493
SPO2341
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
 
     0.450
SPO0833
Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.
       0.421
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.