STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0847Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733. (1534 aa)    
Predicted Functional Partners:
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
0.999
SPO0846
Phosphopantetheinyl transferase PptA, putative; Identified by similarity to GB:AAG43513.1; match to protein family HMM PF01648; Belongs to the P-Pant transferase superfamily.
  
 0.993
SPO0848
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.965
SPO1931
Acyl carrier protein, putative; Identified by similarity to SP:P20804; match to protein family HMM PF00550.
  
 
 0.962
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.962
SPO0778
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.
 
 
0.950
SPO0843
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
 
 0.950
SPO0844
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.929
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Identified by similarity to SP:P48247; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.923
SPO0841
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
   
 0.917
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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