Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0854Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534. (359 aa)    
Predicted Functional Partners:
SPO0853
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.854
SPO0852
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
  
  
 0.814
SPO1536
Glycosyltransferase, group 1; Identified by match to protein family HMM PF00534.
  
     0.661
SPO1533
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
     0.635
SPO1534
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.585
SPO0838
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.569
SPO0841
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
  
 0.554
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
  
  
 0.513
xylA
Xylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family.
       0.483
galM
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
     
 0.450
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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