STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312. (482 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family.
 
 
 0.998
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.965
galM
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
 
  
 0.895
glpD
Aerobic glycerol-3-phosphate dehydrogenase; Identified by similarity to SP:P13035; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.721
SPO0858
Methylamine utilization protein MauG, putative; Identified by similarity to SP:Q49128.
  
    0.709
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
  
  
 0.671
xylH
Xylose ABC transporter, permease protein; Identified by similarity to SP:P37389; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.647
fsaB
Fructose-6-phosphate aldolase 2; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.631
xylG
Xylose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.616
SPO0852
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
  
  
 0.611
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.