STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family. (434 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
 
 0.998
galM
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
 
  
 0.901
SPO0864
Glucokinase, putative; Belongs to the bacterial glucokinase family.
     
 0.817
xylF
Xylose ABC transporter, periplasmic xylose-binding protein; Identified by similarity to SP:P37387; match to protein family HMM PF00532.
 
  
 0.733
xylH
Xylose ABC transporter, permease protein; Identified by similarity to SP:P37389; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.718
SPO0858
Methylamine utilization protein MauG, putative; Identified by similarity to SP:Q49128.
       0.710
xylG
Xylose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.656
SPO0860
Xylose repressor, putative; Identified by similarity to SP:P16557; match to protein family HMM PF00480.
 
   
 0.550
SPO0852
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
  
  
 0.536
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.493
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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