STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0858Methylamine utilization protein MauG, putative; Identified by similarity to SP:Q49128. (432 aa)    
Predicted Functional Partners:
SPO0859
FG-GAP repeat domain protein; Identified by match to protein family HMM PF01839.
   
 0.821
galM
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
       0.774
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
  
    0.709
xylA
Xylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family.
       0.709
SPO1643
Selenium-binding protein, putative; Identified by match to protein family HMM PF05694.
  
 
 0.644
SPO2378
Selenium-binding protein, putative; Identified by match to protein family HMM PF05694.
  
 
 0.644
xylH
Xylose ABC transporter, permease protein; Identified by similarity to SP:P37389; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
     0.643
SPO1513
Hypothetical protein; Identified by similarity to GB:AAM77056.1.
  
 
 0.638
xylF
Xylose ABC transporter, periplasmic xylose-binding protein; Identified by similarity to SP:P37387; match to protein family HMM PF00532.
  
     0.618
xylG
Xylose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.608
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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