STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0860Xylose repressor, putative; Identified by similarity to SP:P16557; match to protein family HMM PF00480. (398 aa)    
Predicted Functional Partners:
SPO0859
FG-GAP repeat domain protein; Identified by match to protein family HMM PF01839.
 
   
 0.954
xylF
Xylose ABC transporter, periplasmic xylose-binding protein; Identified by similarity to SP:P37387; match to protein family HMM PF00532.
 
     0.851
xylH
Xylose ABC transporter, permease protein; Identified by similarity to SP:P37389; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.823
xylG
Xylose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.818
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221.
  
 0.688
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
  
 0.591
SPO0865
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
   
 0.559
xylA
Xylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family.
 
   
 0.550
SPO0858
Methylamine utilization protein MauG, putative; Identified by similarity to SP:Q49128.
  
    0.537
SPO1885
Membrane protein, putative.
     
 0.511
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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