STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylHXylose ABC transporter, permease protein; Identified by similarity to SP:P37389; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (432 aa)    
Predicted Functional Partners:
xylG
Xylose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.997
xylF
Xylose ABC transporter, periplasmic xylose-binding protein; Identified by similarity to SP:P37387; match to protein family HMM PF00532.
 
 0.994
SPO0859
FG-GAP repeat domain protein; Identified by match to protein family HMM PF01839.
 
     0.877
SPO0860
Xylose repressor, putative; Identified by similarity to SP:P16557; match to protein family HMM PF00480.
 
     0.819
SPO0865
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
     0.812
SPO0864
Glucokinase, putative; Belongs to the bacterial glucokinase family.
       0.777
xylA
Xylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family.
 
  
 0.728
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
  
 0.675
SPO0858
Methylamine utilization protein MauG, putative; Identified by similarity to SP:Q49128.
  
     0.643
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.