STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0867Hypothetical protein; Identified by similarity to GB:AAN29006.1; match to protein family HMM PF04357. (1360 aa)    
Predicted Functional Partners:
SPO0868
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
 
 
 0.996
SPO0866
Gamma-glutamyltranspeptidase, putative; Identified by match to protein family HMM PF01019.
 
     0.802
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
  
     0.574
SPO2746
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.551
bamA
Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.543
SPO2987
Lipoprotein, putative; Identified by similarity to GB:AAB93481.1.
  
     0.507
SPO0869
Membrane protein, putative; Identified by match to protein family HMM PF00034; match to protein family HMM PF06181.
       0.481
SPO0438
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein.
 
   
 0.467
SPO2284
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464.
 
     0.453
SPO2205
Identified by match to protein family HMM PF03734.
 
   
 0.417
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.