STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0868Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103. (601 aa)    
Predicted Functional Partners:
SPO0867
Hypothetical protein; Identified by similarity to GB:AAN29006.1; match to protein family HMM PF04357.
 
 
 0.996
SPO0866
Gamma-glutamyltranspeptidase, putative; Identified by match to protein family HMM PF01019.
       0.773
SPO0869
Membrane protein, putative; Identified by match to protein family HMM PF00034; match to protein family HMM PF06181.
       0.481
bamA
Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.471
lpcC
Lipopolysaccharide core biosynthesis mannosyltransferase; Identified by similarity to SP:O68547; match to protein family HMM PF00534.
  
     0.453
SPO2284
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464.
 
     0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.