STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0871Identified by match to protein family HMM PF00576; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (118 aa)    
Predicted Functional Partners:
SPO0872
Polysaccharide deacetylase family protein.
  
 0.994
SPO2386
Hypothetical protein; Identified by similarity to GB:AAM35187.1.
  
  
 
0.922
SPO0869
Membrane protein, putative; Identified by match to protein family HMM PF00034; match to protein family HMM PF06181.
 
  
 0.860
xdhB
Xanthine dehydrogenase, B subunit; Identified by similarity to GB:CAA04470.2.
 
  
 0.849
allA
Ureidoglycolate hydrolase; Identified by similarity to SP:P77731; match to protein family HMM PF04115.
 
    0.836
xdhA
Xanthine dehydrogenase, A subunit; Identified by similarity to GB:CAA04469.1.
 
     0.812
SPO2956
Guanine deaminase, putative; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
   
 0.773
xdhC
Xanthine dehydrogenase accessory factor; Identified by similarity to GB:CAB41849.1.
 
     0.736
SPO0874
Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.
 
  
 0.668
msrQ
Membrane protein, putative; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, usi [...]
  
    0.664
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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