STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0872Polysaccharide deacetylase family protein. (471 aa)    
Predicted Functional Partners:
SPO0871
Identified by match to protein family HMM PF00576; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
 0.994
allA
Ureidoglycolate hydrolase; Identified by similarity to SP:P77731; match to protein family HMM PF04115.
 
    0.975
SPO2556
N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
   
 0.931
SPO0869
Membrane protein, putative; Identified by match to protein family HMM PF00034; match to protein family HMM PF06181.
 
    0.898
SPO2386
Hypothetical protein; Identified by similarity to GB:AAM35187.1.
 
  
 0.832
SPO3304
Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
    
 0.830
SPO0874
Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.
 
  
 0.827
xdhB
Xanthine dehydrogenase, B subunit; Identified by similarity to GB:CAA04470.2.
 
     0.822
xdhA
Xanthine dehydrogenase, A subunit; Identified by similarity to GB:CAA04469.1.
 
     0.814
SPO1781
Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
   
 0.809
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.