STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allAUreidoglycolate hydrolase; Identified by similarity to SP:P77731; match to protein family HMM PF04115. (162 aa)    
Predicted Functional Partners:
SPO0876
Hypothetical protein; Identified by similarity to GB:BAB51632.1; match to protein family HMM PF06038.
 
  
  0.984
SPO0872
Polysaccharide deacetylase family protein.
 
    0.975
ureB
Urease, beta subunit; Identified by similarity to GB:BAB21066.1; match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family.
    
 0.906
ureA
Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.
    
  0.902
ureC
Urease, alpha subunit; Identified by match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
    
  0.902
SPO0869
Membrane protein, putative; Identified by match to protein family HMM PF00034; match to protein family HMM PF06181.
 
    0.845
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
  
 0.844
SPO3029
Serine--glyoxylate transaminase, putative; Identified by similarity to SP:O08374; match to protein family HMM PF00266.
  
  
  0.837
SPO0871
Identified by match to protein family HMM PF00576; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
    0.836
SPO0874
Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.
 
     0.805
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.