STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0890Lipase, putative; Identified by similarity to GB:AAM73853.1. (257 aa)    
Predicted Functional Partners:
SPO0889
Membrane protein, putative; Identified by match to protein family HMM PF00892.
      0.840
SPO1847
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
   
 
 0.832
SPO3296
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
   
 
 0.832
SPO0778
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.
    
 0.804
SPO1014
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
    
 0.804
SPO3003
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
    
 0.804
SPO0891
Alkylphosphonate utilization protein PhnM, putative; Identified by similarity to SP:P16689; match to protein family HMM PF01979.
       0.786
SPO0369
Acyltransferase family protein; Identified by similarity to SP:P00482; match to protein family HMM PF01553.
  
   
 0.684
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
   0.591
rpmB
Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.579
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.