Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
SPO0891Alkylphosphonate utilization protein PhnM, putative; Identified by similarity to SP:P16689; match to protein family HMM PF01979. (382 aa)    
Predicted Functional Partners:
phnL
Alkylphosphonate utilization protein PhnL; Identified by similarity to SP:P16679.
 
 
 0.993
phnI
Alkylphosphonate utilization protein PhnI; Identified by similarity to SP:P16687.
 
 
 0.987
phnJ
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 
 0.987
phnG
Alkylphosphonate utilization protein PhnG; Identified by similarity to SP:P16685.
 
 
 0.984
phnH
Alkylphosphonate utilization protein PhnH; Identified by similarity to SP:P16686.
 
 
 0.982
phnM
Alkylphosphonate utilization protein PhnM; Identified by similarity to SP:P16689.
  
  
 
0.923
phnK
Alkylphosphonate utilization protein PhnK; Identified by similarity to SP:P16678.
 
  
 0.900
SPO0475
Hypothetical protein; Identified by similarity to GB:AAN29788.1.
 
     0.801
SPO0890
Lipase, putative; Identified by similarity to GB:AAM73853.1.
       0.784
SPO0889
Membrane protein, putative; Identified by match to protein family HMM PF00892.
       0.654
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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