STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0898Hypothetical protein; Identified by similarity to PIR:AH1879. (286 aa)    
Predicted Functional Partners:
SPO3391
Alpha-1,2-fucosyltransferase, putative; Identified by similarity to GB:AAC99764.1; match to protein family HMM PF01531.
 
     0.790
SPO0897
Phenazine biosynthesis protein, PhzF family; Identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654.
       0.774
SPO3385
Glycosyl transferase, family 25; Identified by match to protein family HMM PF01755.
 
     0.725
lpcC
Lipopolysaccharide core biosynthesis mannosyltransferase; Identified by similarity to SP:O68547; match to protein family HMM PF00534.
  
     0.630
SPO0899
Hypothetical protein; Identified by Glimmer2; putative.
       0.607
SPO3384
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
  
     0.549
SPO0895
Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
       0.544
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
       0.544
SPO0461
ParA family protein.
  
     0.459
SPO2481
Identified by match to protein family HMM PF00892.
  
     0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.