STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292. (313 aa)    
Predicted Functional Partners:
trx
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
 
 0.989
SPO2899
Selenide,water dikinase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF02769.
    
 0.944
SPO3344
Cys/Met metabolism PLP-dependent enzyme family protein; Identified by match to protein family HMM PF01053.
  
 
 0.912
sufS
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.911
SPO3383
Thiol-specific antioxidant protein; Identified by similarity to GB:BAC00970.1; match to protein family HMM PF00578.
  
 
 0.906
SPO3423
Thioredoxin; Identified by match to protein family HMM PF00085.
  
 
 0.841
SPO0442
Thioredoxin.
  
 
 0.834
SPO0070
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
  
 
 0.818
SPO0902
Hypothetical protein; Identified by similarity to GB:AAM35160.1.
       0.779
SPO0204
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.742
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.