Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0905Hypothetical protein; Identified by similarity to PIR:T03518. (261 aa)    
Predicted Functional Partners:
SPO1866
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.791
SPO1310
Hypothetical protein; Identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049.
  
     0.708
SPO1320
Lipoprotein, putative.
  
    0.700
SPO0459
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.679
SPO0035
Identified by match to protein family HMM PF02485.
  
     0.640
SPO2148
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.630
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.628
SPO0725
Bacterial SH3 domain family protein.
  
     0.599
SPO3868
Hypothetical protein; Identified by similarity to GB:AAM48718.1.
  
 
   0.586
SPO3813
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.575
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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