STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0915Hypothetical protein; Identified by similarity to PIR:AB2631. (186 aa)    
Predicted Functional Partners:
SPO3437
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
  
     0.754
SPO3333
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
  
     0.693
SPO2612
DNA-binding protein HU, putative.
  
     0.689
SPO3335
Glutamine ABC transporter, periplasmic glutamine-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.
  
     0.641
SPO1320
Lipoprotein, putative.
  
     0.595
SPO3182
Hypothetical protein; Identified by similarity to PIR:T03518.
  
     0.570
SPO2463
Hypothetical protein; Identified by similarity to GB:CAE21209.1.
  
     0.541
tdk
Thymidine kinase; Identified by similarity to SP:P23331; match to protein family HMM PF00265.
       0.533
SPO3375
Hypothetical protein; Identified by similarity to GB:BAB50839.1.
  
     0.531
SPO0975
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.521
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.