STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0933Hypothetical protein; Identified by similarity to GB:BAB48740.1. (91 aa)    
Predicted Functional Partners:
SPO0932
methylmalonyl-CoA epimerase; Identified by similarity to GB:AAK52053.1; match to protein family HMM PF00903.
       0.796
SPO1381
Hypothetical protein; Identified by similarity to PIR:E98182.
  
     0.626
SPO1180
Hypothetical protein; Identified by similarity to GB:BAB48908.1.
  
     0.621
SPO0931
Response regulator; Identified by match to protein family HMM PF00072.
       0.599
SPO3336
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.596
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.588
SPO2351
Hypothetical protein; Identified by similarity to GB:BAB48126.1; match to protein family HMM PF06945.
  
     0.478
SPO0930
Hypothetical protein; Identified by Glimmer2; putative.
       0.462
SPO1376
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM PF05157.
  
     0.441
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.437
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.