STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0934Membrane protein, putative. (231 aa)    
Predicted Functional Partners:
SPO0935
Identified by match to protein family HMM PF00881.
  
    0.887
SPO0937
Hypothetical protein; Identified by similarity to SP:Q9Z854; match to protein family HMM PF02594; Belongs to the UPF0235 family.
       0.575
SPO3348
Hypothetical protein; Identified by similarity to GB:CAD85590.1.
  
     0.566
SPO0936
Hypothetical protein; Identified by Glimmer2; putative.
       0.526
SPO2330
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.520
pcs
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.500
SPO3623
Hypothetical protein; Identified by similarity to GB:CAE25504.1.
  
     0.488
SPO2227
Hypothetical protein; Identified by similarity to GB:BAC49590.1.
  
     0.446
SPO2752
Hypothetical protein; Identified by similarity to GB:AAN33802.1.
  
     0.430
SPO3055
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.427
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.