SPO0935 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO0935

Identified by match to protein family HMM PF00881. (192 aa)

Predicted Functional Partners:

SPO0934

0.870

SPO0937

0.558

SPO0936

0.526

SPO1414

0.495

SPO0110

0.472

SPO0847

0.472

SPO1683

0.422

gltB

0.420

tadA

0.416

SPO0689

0.415

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0110	SPO0847	SPO0110	SPO0847	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.413
SPO0110	SPO0935	SPO0110	SPO0935	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	Identified by match to protein family HMM PF00881.	0.472
SPO0110	gltB	SPO0110	SPO3768	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.413
SPO0689	SPO0935	SPO0689	SPO0935	Hypothetical protein; Identified by similarity to GB:AAK24136.1.	Identified by match to protein family HMM PF00881.	0.415
SPO0847	SPO0110	SPO0847	SPO0110	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	0.413
SPO0847	SPO0935	SPO0847	SPO0935	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Identified by match to protein family HMM PF00881.	0.472
SPO0847	SPO1414	SPO0847	SPO1414	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.	0.453
SPO0847	gltB	SPO0847	SPO3768	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.559
SPO0934	SPO0935	SPO0934	SPO0935	Membrane protein, putative.	Identified by match to protein family HMM PF00881.	0.870
SPO0934	SPO0936	SPO0934	SPO0936	Membrane protein, putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.526
SPO0934	SPO0937	SPO0934	SPO0937	Membrane protein, putative.	Hypothetical protein; Identified by similarity to SP:Q9Z854; match to protein family HMM PF02594; Belongs to the UPF0235 family.	0.543
SPO0935	SPO0110	SPO0935	SPO0110	Identified by match to protein family HMM PF00881.	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	0.472
SPO0935	SPO0689	SPO0935	SPO0689	Identified by match to protein family HMM PF00881.	Hypothetical protein; Identified by similarity to GB:AAK24136.1.	0.415
SPO0935	SPO0847	SPO0935	SPO0847	Identified by match to protein family HMM PF00881.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.472
SPO0935	SPO0934	SPO0935	SPO0934	Identified by match to protein family HMM PF00881.	Membrane protein, putative.	0.870
SPO0935	SPO0936	SPO0935	SPO0936	Identified by match to protein family HMM PF00881.	Hypothetical protein; Identified by Glimmer2; putative.	0.526
SPO0935	SPO0937	SPO0935	SPO0937	Identified by match to protein family HMM PF00881.	Hypothetical protein; Identified by similarity to SP:Q9Z854; match to protein family HMM PF02594; Belongs to the UPF0235 family.	0.558
SPO0935	SPO1414	SPO0935	SPO1414	Identified by match to protein family HMM PF00881.	Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.	0.495
SPO0935	SPO1683	SPO0935	SPO1683	Identified by match to protein family HMM PF00881.	Hypothetical protein; Identified by similarity to GB:AAK22449.1.	0.422
SPO0935	gltB	SPO0935	SPO3768	Identified by match to protein family HMM PF00881.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.420

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Textmining

Co-occurrence

Experiments

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About